Welcome to PairProphet’s documentation!

PairProphet is a software pipeline developed at the University of Washington. This package implements a “first-pass” model that allows researchers to draw on existing proteome data and generate a pairwise screening that will narrow down their search space and vastly reduce screening time. Our pipeline leverages machine learning to train a model based on alignment metrics from multiple programs, centralizing the searching process to one software pipeline that can be executed with a single command.

For more information, please visit our Github. For contributions, see here.