Instructions and Use Case

Training

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PairProphet is trained on the Learn2Therm database, developed by the University of Washington’s Beck Research Group.

Use Case

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Assess protein pair functionality with model developed during training with user_input.py.

Input:

CSV file with protein pairs.

Output:

CSV with:

- protein pairs

- hmmer functionality (Boolean (1=True, 0=False))

- structure functionality (Boolean (1=True, 0=False))

.txt file with:

- accuracy

- mean precision

- mean F1 score

- mean recall